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18:44:25 ĝEBUGĜohortDiagnostics getCohortsJsonAndSqlFromPackageĞxecuting on cohorts specified in package - LegendT2dm 18:44:25 ĝEBUGĜohortDiagnostics createCohortTableĜreated table temp_renv.legendt2dm_study_class_cohort 18:44:25 INFOĜohortDiagnostics createCohortTableĜreating cohort table 18:44:25 WARNĜohortDiagnostics instantiateCohortSet OracleTempSchema has been deprecated by DatabaseConnector 18:44:25 INFO LegendT2dm createExposureCohorts - Populating table legendt2dm_study_class_cohort 18:44:25 INFO LegendT2dm createExposureCohortsĜreating class exposure cohorts Message: Error: '' does not exist in current working directory ('D:/OHDSI-LegendT2DM/LegendT2dm').ġ3: stop("'", path, "' does not exist", if (!is_absolute_path(path)) paste0(" in current working directory ('", getwdġ0: datasource(file, skip = skip, skip_empty_rows = FALSE, skip_quote = FALSE)Ĩ: unlist(read_lines_raw(file, n_max = n_max))ħ: readr::guess_encoding(file = fileName, n_max = min(1e+07))ĥ: getCohortsJsonAndSqlFromPackage(packageName = packageName, cohortToCreateFile = cohortToCreateFile, cohortIds = cĤ: getCohortsJsonAndSql(packageName = packageName, cohortToCreateFile = cohortToCreateFile, baseUrl = baseUrl, cohorģ: CreateAllCohorts.R#63: CohortDiagnostics::instantiateCohortSet(connectionDetails = connectionDetails, cdmDatabaseĢ: Assessment.R#75: createExposureCohorts(connectionDetails = connectionDetails, cdmDatabaseSchema = cdmDatabaseScheġ: assessPhenotypes(connectionDetails = connectionDetails, cdmDatabaseSchema = cdmDatabaseSchema, oracleTempSchema =Įxtra log that might be helpful 18:44:25 INFO LegendT2dm assessPhenotypes Starting assessPhenotypes() for LEGEND-T2DM class-vs-class studies 'D:\OHDSI-LegendT2DM\results' already existsĪn error report has been created at D:/OHDSI-LegendT2DM/results//errorReportR.txt

In dir.create(outputFolder, recursive = TRUE) : Now the problem is Connecting using PostgreSQL driverĮrror: '' does not exist in current working directory ('D:/OHDSI-LegendT2DM/LegendT2dm'). Some how T2DM is built with Sys.unsetenv("R_PROFILE_USER")